/* qPCR Assay Check GUI. One accent (deep teal), status colours as in the report.
   IBM Plex Sans and Mono ship with the package (SIL Open Font License, see fonts/). */

@font-face { font-family: "IBM Plex Sans"; font-weight: 400; font-style: normal; font-display: swap; src: url("fonts/ibm-plex-sans-latin-400-normal.woff2") format("woff2"); }
@font-face { font-family: "IBM Plex Sans"; font-weight: 500; font-style: normal; font-display: swap; src: url("fonts/ibm-plex-sans-latin-500-normal.woff2") format("woff2"); }
@font-face { font-family: "IBM Plex Sans"; font-weight: 600; font-style: normal; font-display: swap; src: url("fonts/ibm-plex-sans-latin-600-normal.woff2") format("woff2"); }
@font-face { font-family: "IBM Plex Mono"; font-weight: 400; font-style: normal; font-display: swap; src: url("fonts/ibm-plex-mono-latin-400-normal.woff2") format("woff2"); }
@font-face { font-family: "IBM Plex Mono"; font-weight: 500; font-style: normal; font-display: swap; src: url("fonts/ibm-plex-mono-latin-500-normal.woff2") format("woff2"); }

:root {
  --bg: #F3F5F7; --surface: #FFFFFF; --border: #D9E0E7; --text: #15202B; --muted: #4F5D6B;
  --accent: #0E6670; --accent-text: #0E6670; --on-accent: #FFFFFF; --nav-active: #E4F0F1;
  --code: #F7F9FA; --focus: #0E6670;
  --ok-bg: #E2F3E8; --ok-fg: #1B6B3A; --review-bg: #FCEFD6; --review-fg: #7D4A00;
  --exceeds-bg: #FBE4E1; --exceeds-fg: #9F2418; --incomplete-bg: #E6EBF1; --incomplete-fg: #34465B;
  --radius: 12px; --radius-sm: 8px;
  --font: "IBM Plex Sans", system-ui, -apple-system, "Segoe UI", sans-serif;
  --mono: "IBM Plex Mono", ui-monospace, "SFMono-Regular", Menlo, monospace;
  color-scheme: light;
}
@media (prefers-color-scheme: dark) {
  :root:not([data-theme="light"]) {
    --bg: #0F151B; --surface: #17202A; --border: #2A3644; --text: #E6ECF2; --muted: #A3B0BE;
    --accent: #4FB3B9; --accent-text: #7CCBD0; --on-accent: #0B1116; --nav-active: #1E2C38;
    --code: #121A22; --focus: #7CCBD0;
    --ok-bg: #143222; --ok-fg: #8FDDAD; --review-bg: #3A2A0E; --review-fg: #F2C46B;
    --exceeds-bg: #3D1715; --exceeds-fg: #F49B91; --incomplete-bg: #222E3B; --incomplete-fg: #B5C3D3;
    color-scheme: dark;
  }
}
:root[data-theme="dark"] {
  --bg: #0F151B; --surface: #17202A; --border: #2A3644; --text: #E6ECF2; --muted: #A3B0BE;
  --accent: #4FB3B9; --accent-text: #7CCBD0; --on-accent: #0B1116; --nav-active: #1E2C38;
  --code: #121A22; --focus: #7CCBD0;
  --ok-bg: #143222; --ok-fg: #8FDDAD; --review-bg: #3A2A0E; --review-fg: #F2C46B;
  --exceeds-bg: #3D1715; --exceeds-fg: #F49B91; --incomplete-bg: #222E3B; --incomplete-fg: #B5C3D3;
  color-scheme: dark;
}

*, *::before, *::after { box-sizing: border-box; }
html { -webkit-text-size-adjust: 100%; }
body { margin: 0; background: var(--bg); color: var(--text); font: 400 14px/1.5 var(--font); }
h1, h2, h3, p { margin: 0; }
h1 { font-size: 26px; font-weight: 600; line-height: 1.25; }
h2 { font-size: 16px; font-weight: 600; }
h3 { font-size: 15px; font-weight: 600; }
a { color: var(--accent-text); }
code, .mono { font-family: var(--mono); }
code { font-size: 0.92em; background: var(--code); border: 1px solid var(--border); border-radius: 4px; padding: 0 4px; }
:focus-visible { outline: 2px solid var(--focus); outline-offset: 2px; }

.muted { color: var(--muted); }
.small { font-size: 12.5px; }
.nowrap { white-space: nowrap; }
.stack-4 { display: flex; flex-direction: column; gap: 4px; }
.stack-12 { display: flex; flex-direction: column; gap: 12px; }
.clamp-3 { display: -webkit-box; -webkit-line-clamp: 3; -webkit-box-orient: vertical; overflow: hidden; }

/* buttons and fields */
.btn { display: inline-flex; align-items: center; justify-content: center; min-height: 44px; padding: 0 18px; border-radius: var(--radius-sm); border: 1px solid var(--border); background: var(--surface); color: var(--text); font: 500 14px var(--font); cursor: pointer; text-decoration: none; }
.btn-primary { background: var(--accent); border-color: var(--accent); color: var(--on-accent); font-weight: 600; }
.btn-block { width: 100%; }
.field { display: flex; flex-direction: column; gap: 8px; }
.field label { font-weight: 500; }
.field input { height: 44px; border-radius: var(--radius-sm); border: 1px solid var(--border); background: var(--bg); color: var(--text); padding: 0 12px; font: 400 15px var(--font); }
.notice { padding: 10px 12px; border-radius: var(--radius-sm); background: var(--incomplete-bg); color: var(--incomplete-fg); }
.notice-error { background: var(--exceeds-bg); color: var(--exceeds-fg); }

/* status chips */
.chip { display: inline-flex; align-self: flex-start; align-items: center; height: 26px; padding: 0 10px; border-radius: 13px; font-size: 12px; font-weight: 600; white-space: nowrap; }
.chip-sm { height: 22px; padding: 0 8px; font-size: 11.5px; }
.chip-ok { background: var(--ok-bg); color: var(--ok-fg); }
.chip-review { background: var(--review-bg); color: var(--review-fg); }
.chip-exceeds { background: var(--exceeds-bg); color: var(--exceeds-fg); }
.chip-incomplete { background: var(--incomplete-bg); color: var(--incomplete-fg); }

/* login */
.login { min-height: 100vh; display: flex; align-items: center; justify-content: center; padding: 32px 16px; }
.login-inner { width: 100%; max-width: 400px; display: flex; flex-direction: column; gap: 28px; }
.login-card { display: flex; flex-direction: column; gap: 20px; padding: 28px; }
.login-card h1 { font-size: 22px; }

/* brand */
.brand { display: flex; align-items: center; gap: 12px; color: var(--text); text-decoration: none; }
.brand-mark { width: 40px; height: 40px; border-radius: 10px; background: var(--accent); color: var(--on-accent); display: inline-flex; align-items: center; justify-content: center; flex: none; }
.brand-mark-sm { width: 32px; height: 32px; border-radius: 8px; }
.brand-text { display: flex; flex-direction: column; }
.brand-text strong { font-size: 18px; font-weight: 600; }
.brand-text span { font-size: 13px; color: var(--muted); }

/* app shell */
.shell { min-height: 100vh; display: flex; flex-wrap: wrap; }
.sidebar { flex: 0 0 232px; padding: 20px 14px; background: var(--surface); border-right: 1px solid var(--border); display: flex; flex-direction: column; gap: 24px; }
.sidebar .brand { padding: 0 8px; gap: 10px; font-size: 15px; }
.nav { list-style: none; margin: 0; padding: 0; display: flex; flex-direction: column; gap: 2px; }
.nav-item { display: flex; align-items: center; gap: 10px; width: 100%; min-height: 44px; padding: 0 12px; border: none; border-radius: var(--radius-sm); background: transparent; color: var(--text); font: 400 14px var(--font); text-decoration: none; text-align: left; cursor: pointer; }
.nav-item:hover { background: var(--nav-active); }
.nav-item.is-active { background: var(--nav-active); color: var(--accent-text); font-weight: 600; }
.nav-item.is-disabled { color: var(--muted); cursor: default; }
.nav-item.is-disabled:hover { background: transparent; }
.soon { margin-left: auto; font-size: 11px; border: 1px solid var(--border); border-radius: 10px; padding: 0 6px; }
.sidebar-foot { margin-top: auto; display: flex; flex-direction: column; gap: 4px; }
.sidebar-foot form { margin: 0; }
.sidebar-foot > .small { padding: 8px 12px 0; }
.theme-toggle { display: flex; align-items: center; gap: 10px; min-height: 44px; padding: 0 12px; border: none; border-radius: var(--radius-sm); background: transparent; color: var(--muted); font: 400 14px var(--font); cursor: pointer; }
.theme-toggle:hover, .signout:hover { background: var(--nav-active); }
.signout { color: var(--muted); }
.main { flex: 1 1 560px; min-width: 0; max-width: 1200px; padding: 28px 32px 40px; display: flex; flex-direction: column; gap: 24px; }
.page-head { display: flex; flex-wrap: wrap; align-items: flex-end; justify-content: space-between; gap: 12px; }
.footer { margin-top: auto; padding-top: 16px; border-top: 1px solid var(--border); }

/* cards and tables */
.card { background: var(--surface); border: 1px solid var(--border); border-radius: var(--radius); padding: 20px; }
.card-grid { display: grid; grid-template-columns: repeat(auto-fit, minmax(300px, 1fr)); gap: 16px; }
.checks { list-style: none; margin: 0; padding: 0; display: flex; flex-direction: column; gap: 6px; }
.checks li { display: flex; align-items: center; justify-content: space-between; gap: 8px; font-size: 13px; }
.empty { display: flex; flex-direction: column; gap: 8px; }
.table-card { padding: 0; }
.table-title { padding: 16px 20px; }
.table-scroll { overflow-x: auto; }
table { width: 100%; border-collapse: collapse; }
th { text-align: left; color: var(--muted); font-size: 12px; font-weight: 500; text-transform: uppercase; letter-spacing: 0.4px; padding: 10px 12px; }
td { padding: 12px; border-top: 1px solid var(--border); vertical-align: middle; }
th:first-child, td:first-child { padding-left: 20px; }
th:last-child, td:last-child { padding-right: 20px; }

@media (max-width: 720px) {
  .sidebar { flex: 1 1 100%; border-right: none; border-bottom: 1px solid var(--border); padding: 12px 16px; gap: 12px; }
  .nav { flex-direction: row; flex-wrap: wrap; }
  .nav-item { width: auto; }
  .soon { display: none; }
  .sidebar-foot { flex-direction: row; flex-wrap: wrap; align-items: center; }
  .main { padding: 20px 16px 32px; }
}

/* G2: assays */
.visually-hidden { position: absolute; width: 1px; height: 1px; padding: 0; margin: -1px; overflow: hidden; clip: rect(0 0 0 0); white-space: nowrap; border: 0; }
.stack-2 { display: flex; flex-direction: column; gap: 2px; }
.stack-20 { display: flex; flex-direction: column; gap: 20px; }
.strong { font-weight: 500; }
.right { text-align: right; }
.grow { flex: 1 1 240px; }
.row-between { display: flex; align-items: center; justify-content: space-between; gap: 12px; flex-wrap: wrap; }
.row-form { display: flex; flex-wrap: wrap; align-items: flex-end; gap: 10px; margin: 0; }
.actions { display: flex; gap: 10px; align-items: flex-start; flex-wrap: wrap; }
.actions form { margin: 0; }
.back { color: var(--accent-text); text-decoration: none; font-size: 13px; }
.btn-sm { min-height: 36px; padding: 0 12px; font-size: 13px; }
.btn:disabled { opacity: 0.55; cursor: not-allowed; }
.btn-danger { background: var(--exceeds-fg); border-color: var(--exceeds-fg); color: #FFFFFF; font-weight: 600; }
:root[data-theme="dark"] .btn-danger { color: #0B1116; }
.notice-ok { background: var(--ok-bg); color: var(--ok-fg); }
.field select, .field textarea, .input-sm { border-radius: var(--radius-sm); border: 1px solid var(--border); background: var(--bg); color: var(--text); font: 400 14px var(--font); }
.field select { height: 44px; padding: 0 10px; }
.field textarea { padding: 10px 12px; resize: vertical; }
.input-sm { height: 36px; padding: 0 8px; min-width: 0; width: 100%; }
.input-sm.name { min-width: 110px; }
.oligo-table select.input-sm { min-width: 96px; }
.input-sm.seq { min-width: 210px; letter-spacing: 0.4px; font-family: var(--mono); font-size: 13px; }
.input-sm.short { min-width: 72px; }
.row-form .input-sm { width: auto; min-width: 220px; }
.danger-zone { position: relative; }
.danger-zone > summary { list-style: none; }
.danger-zone > summary::-webkit-details-marker { display: none; }
.popover { position: absolute; right: 0; top: 52px; width: 300px; z-index: 5; box-shadow: 0 8px 24px rgba(0, 0, 0, 0.12); }
.tabs { display: flex; gap: 4px; border-bottom: 1px solid var(--border); }
.tab { display: inline-flex; align-items: center; min-height: 44px; padding: 0 16px; margin-bottom: -1px; border-bottom: 2px solid transparent; color: var(--muted); text-decoration: none; }
.tab.is-active { border-bottom-color: var(--accent); color: var(--accent-text); font-weight: 600; }
.editor { display: flex; flex-wrap: wrap; gap: 20px; align-items: flex-start; }
.editor-main { flex: 1 1 720px; min-width: 0; }
.editor-side { flex: 1 1 300px; max-width: 380px; }
.form-grid { display: grid; grid-template-columns: repeat(auto-fit, minmax(200px, 1fr)); gap: 16px; }
.oligo-table td { padding: 8px 6px; }
.oligo-table th:last-child, .oligo-table td:last-child { padding-right: 20px; text-align: center; }
.oligo-table td:first-child { padding-left: 20px; white-space: nowrap; color: var(--muted); }
.oligo-table .new-row td { background: var(--code); }
.table-note { padding: 12px 20px 16px; }
.code-editor { width: 100%; min-height: 560px; padding: 16px; border-radius: var(--radius); border: 1px solid var(--border); background: var(--code); color: var(--text); font: 400 13px/1.6 var(--mono); tab-size: 2; resize: vertical; white-space: pre; overflow: auto; }
.error-list { margin: 0; padding-left: 18px; display: flex; flex-direction: column; gap: 6px; color: var(--exceeds-fg); font-size: 13px; white-space: pre-wrap; }
.qc-list { list-style: none; margin: 0; padding: 0; display: flex; flex-direction: column; gap: 8px; font-size: 13px; }
.qc-list li { display: flex; gap: 8px; align-items: flex-start; }
.qc-list .chip { flex: none; }
.facts { display: grid; grid-template-columns: max-content 1fr; gap: 6px 12px; margin: 0; font-size: 13px; }
.facts dt { color: var(--muted); }
.facts dd { margin: 0; overflow-wrap: anywhere; }

/* G3: runs */
.row-gap { display: flex; align-items: center; gap: 10px; }
.narrow { max-width: 860px; }
fieldset.card { margin: 0; min-width: 0; }
legend { padding: 0 6px; font-weight: 600; }
.choice { display: flex; align-items: center; gap: 12px; min-height: 44px; cursor: pointer; }
.choice input { width: 18px; height: 18px; accent-color: var(--accent); flex: none; }
.chip-gap { margin-left: 8px; vertical-align: middle; }
.wrap { overflow-wrap: anywhere; }
.mono-values dd { letter-spacing: 0.4px; }
.live-dot { width: 10px; height: 10px; border-radius: 5px; background: var(--accent); flex: none; animation: pulse 1.6s ease-in-out infinite; }
@keyframes pulse { 50% { opacity: 0.35; } }
@media (prefers-reduced-motion: reduce) { .live-dot { animation: none; } }
progress.bar { appearance: none; width: 100%; height: 10px; border: none; border-radius: 5px; background: var(--border); overflow: hidden; }
progress.bar::-webkit-progress-bar { background: var(--border); border-radius: 5px; }
progress.bar::-webkit-progress-value { background: var(--accent); border-radius: 5px; }
progress.bar::-moz-progress-bar { background: var(--accent); border-radius: 5px; }
.btn-danger-outline { border-color: var(--exceeds-fg); color: var(--exceeds-fg); background: transparent; }
.run-layout { display: flex; flex-wrap: wrap; gap: 20px; align-items: flex-start; }
.stages { flex: 0 1 300px; display: flex; flex-direction: column; gap: 12px; }
.run-main { flex: 1 1 480px; min-width: 0; }
.stage-list { list-style: none; margin: 0; padding: 0; display: flex; flex-direction: column; gap: 4px; }
.stage { display: flex; align-items: center; gap: 12px; min-height: 40px; }
.stage-dot { width: 24px; height: 24px; flex: none; border-radius: 12px; display: inline-flex; align-items: center; justify-content: center; font-size: 12px; font-weight: 600; border: 1px solid var(--border); color: var(--muted); }
.stage-done .stage-dot { background: var(--accent); border-color: var(--accent); color: var(--on-accent); }
.stage-active .stage-dot { border: 2px solid var(--accent); color: var(--accent-text); }
.stage-active { font-weight: 600; }
.log-card { background: var(--code); }
.log { margin: 0; max-height: 520px; overflow: auto; font: 400 12.5px/1.6 var(--mono); white-space: pre-wrap; overflow-wrap: anywhere; color: var(--text); }
[hidden] { display: none !important; }

/* G4: results */
.card-links { display: flex; flex-wrap: wrap; gap: 16px; margin-top: auto; font-weight: 600; font-size: 13px; }
.card-links a { color: var(--accent-text); text-decoration: none; min-height: 32px; display: inline-flex; align-items: center; }
.card-links a:hover { text-decoration: underline; }
.checks-wide { display: grid; grid-template-columns: repeat(auto-fit, minmax(260px, 1fr)); gap: 8px 24px; }
.subrow td { border-top: none; padding-top: 0; }
.report-card { padding: 0; overflow: hidden; }
.report-head { padding: 14px 20px; border-bottom: 1px solid var(--border); }
.report-frame { display: block; width: 100%; height: 80vh; min-height: 520px; border: 0; background: #FFFFFF; resize: vertical; }

/* G5: settings */
.field-end { justify-content: flex-end; }